MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2780238899698785
cnr4.596881381158838
efc0.5858085526991212
fber91.71246337890625
fwhmavg4.024596666666667
fwhmx3.88363
fwhmy4.24032
fwhmz3.94984
icvscsf0.184646099184292
icvsgm0.47626954928532367
icvswm0.3390843515303843
inumed1.0584499835968018
inurange0.3130009561777114
qi10.0
qi20.0010053089548278773
rpvecsf28.713601389253398
rpvegm12.824587793777233
rpvewm20.144469180584327
sizex180
sizey256
sizez256
snrcsf2.47724000982687
snrgm10.440466863809792
snrtotal10.609352656550508
snrwm18.91035109601486
snrdcsf12.37640557058825
snrdgm29.152557302048645
snrdtotal29.385580595665555
snrdwm46.62777891435976
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk2.7441095456338855
summarybgmad14.050451278686523
summarybgmean52.55193328857422
summarybgmedian50.387107849121094
summarybgn2824506.0
summarybgp0531.07200574874878
summarybgp9581.71359825134277
summarybgstdv16.267276763916016
summarycsfk0.27090897819997206
summarycsfmad109.01557922363281
summarycsfmean283.37469482421875
summarycsfmedian265.431884765625
summarycsfn15642.0
summarycsfp05138.59789047241213
summarycsfp95475.589810180664
summarycsfstdv107.14480590820312
summarygmk0.12156057113266394
summarygmmad59.18672180175781
summarygmmean627.4290161132812
summarygmmedian625.223388671875
summarygmn50389.0
summarygmp05532.1699951171875
summarygmp95728.7363525390624
summarygmstdv59.88402557373047
summarywmk1.1369258557018371
summarywmmad45.01223373413086
summarywmmean995.9830932617188
summarywmmedian1000.007568359375
summarywmn170408.0
summarywmp05898.7596588134766
summarywmp951074.8596069335936
summarywmstdv52.8813362121582
tpmoverlapcsf0.22670812904834747
tpmoverlapgm0.5463855862617493
tpmoverlapwm0.5464922785758972
wm2max0.6097776792042156

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum3f71747d01d7ef1437ac2c7b8b38b4df
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.