MRIQC: individual T1w report

Summary

Subject ID: 027_ControlPre.
Date and time: 2018-05-06, 20:39.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2780238899698785
cnr			4.596881381158838
efc			0.5858085526991212
fber			91.71246337890625
fwhm	avg		4.024596666666667
fwhm	x		3.88363
fwhm	y		4.24032
fwhm	z		3.94984
icvs	csf		0.184646099184292
icvs	gm		0.47626954928532367
icvs	wm		0.3390843515303843
inu	med		1.0584499835968018
inu	range		0.3130009561777114
qi	1		0.0
qi	2		0.0010053089548278773
rpve	csf		28.713601389253398
rpve	gm		12.824587793777233
rpve	wm		20.144469180584327
size	x		180
size	y		256
size	z		256
snr	csf		2.47724000982687
snr	gm		10.440466863809792
snr	total		10.609352656550508
snr	wm		18.91035109601486
snrd	csf		12.37640557058825
snrd	gm		29.152557302048645
snrd	total		29.385580595665555
snrd	wm		46.62777891435976
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	2.7441095456338855
summary	bg	mad	14.050451278686523
summary	bg	mean	52.55193328857422
summary	bg	median	50.387107849121094
summary	bg	n	2824506.0
summary	bg	p05	31.07200574874878
summary	bg	p95	81.71359825134277
summary	bg	stdv	16.267276763916016
summary	csf	k	0.27090897819997206
summary	csf	mad	109.01557922363281
summary	csf	mean	283.37469482421875
summary	csf	median	265.431884765625
summary	csf	n	15642.0
summary	csf	p05	138.59789047241213
summary	csf	p95	475.589810180664
summary	csf	stdv	107.14480590820312
summary	gm	k	0.12156057113266394
summary	gm	mad	59.18672180175781
summary	gm	mean	627.4290161132812
summary	gm	median	625.223388671875
summary	gm	n	50389.0
summary	gm	p05	532.1699951171875
summary	gm	p95	728.7363525390624
summary	gm	stdv	59.88402557373047
summary	wm	k	1.1369258557018371
summary	wm	mad	45.01223373413086
summary	wm	mean	995.9830932617188
summary	wm	median	1000.007568359375
summary	wm	n	170408.0
summary	wm	p05	898.7596588134766
summary	wm	p95	1074.8596069335936
summary	wm	stdv	52.8813362121582
tpm	overlap	csf	0.22670812904834747
tpm	overlap	gm	0.5463855862617493
tpm	overlap	wm	0.5464922785758972
wm2max			0.6097776792042156

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	3f71747d01d7ef1437ac2c7b8b38b4df
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.